生物信息学数据库与软件:蛋白质与核酸序列 DNA芯片与微阵列技术

英文网站:

CCP11 project (Collaborative Computational Project 11,蛋白质与核酸等序列数据库,软件,杂志书刊,网络教学,会议与新闻等)。

CCP11 project 蛋白质与核酸等序列分析软件。搜集生物信息学网址,遗传作图,基因结构预测和突变分析,蛋白质分类和3维结构预测,蛋白质标纹(motif)和同源搜索等。包括如下各类软件:

Alignments - Local Global
Clustering
Coding Regions
Comparison
Composition
CpG Islands
Database Information Extraction
Debugging
DNA Features Composition
Editing
EST
Evolution
HMMs
Hydropathy
Mapping
Motifs Pattern Matching
Mutation
Primers
Reformatting
Repeats
Protein Features Composition
Secondary Structure
Protein Structure Comparison
Restriction Enzymes
Screening
Transcription
Translation
Utilities
Miscellaneous
Text Search

BioCatalog分子生物学与遗传学软件搜索(European Bioinformatics Institute)。

Clu遗传学与分子生物学资源(日本人类基因组中心,搜集生物信息学网址,基因组物理与遗传作图,基因结构预测和突变分析,蛋白质分类和3维结构预测,蛋白质标纹(motif)和同源搜索、研究单位等信息)。

CCP11蛋白质与核酸序列数据库

AARSDB
AAindex
ACeDB
ALFRED
ALIGN
AMmtDB
ASDB
AbCheck
AndrogenReceptorGeneMutations /Database
Ares Lab Intron Site
Asthma and Allergy Database
Atlas of Genetics and Cytogenetics in Oncology and Hematology
Atlas ofGenetics andCytogenetics inOncology and Hematology
Axeldb
BLOCKS
BodyMap
BBID: Biological Biochemical Image Database
CATH
COMPEL
CUTG
Clusters of Orthologous Groups (COG)
CropNet
CyanoBase
DAtA
DBGET/LinkDB
DDBJ
DExH
Cytokine Gene Polymorphism Database
DFamily /Database
DIP
DPInteract
DRESH
DSSP(EMBL)
Database of Germline p53 Mutations
EID
ENZYME
EPD
Database
EMGlib
ESTHER
EcoGene /Database of Ribosomal Crosslinks (DRC)
EMBL Nucleotide Sequence
GB4-RH
GDB
GOBASE /Endogenous GPCR List
Entrez
EpoDB
ExInt
FIMM
FlyBase
FlyView
G3-RH
GenBank
GenProtEC /GOLD: Genomes OnLine Database
GRAP Mutant Databases
GSDB
GenAtlas
HGBASE Database /Gene Expression Database (GXD)
GeneDis
GeneFIND
GeneMap '99
HGBASE /Announcement
HIV Molecular Immunology Database
HIV Sequence Database
HIV-RT
HOBACGEN
HUGE
HuGeMap /HOVERGEN
Haemophilia B Mutation Database
Histone Sequence Database
Homeobox Page /Homeodomain Resource
Human BAC Ends Database
Human Gene Mutation Database (HMGD)
HvrBase /Human PAX2 Allelic Variant Database
Human PAX6 Allelic Variant Database
IDB/IEDB
IMGT
INE
IXDB
Human Type I and Type III Collagen Mutation Database
InBase
InterPro
Interact
Kabat Database
Kidney Development Database
KinMutBase
Klotho
LGIC
LIGAND
MAGEST
MEROPS /Kyoto Encyclopedia of Genes and Genomes (KEGG)
MHCPEP
MITOMAP
MITOP
MOTIF
MitBASE /Mendel Databases
MitoDat
Molecules R US
Mouse Atlas and Gene Expression Database /Mouse Genome Database (MGD)
Mouse Genome Informatics (MGI)
NRR
NRSub
O-GLYCBASE /Mouse Tumor Biology Database (MTB)
Mutation Spectra Database
PLACE
PMD
PPMdb
PKR /Munich Information Center for Protein Sequences (MIPS)
NCL MutationsPIR
PIR-ALN /OMIM
OWL
Olfactory Receptor Database
PAHdb
PDB
PEDB//ProClass
ProDom
ProfileScan /PRINTS
PROMISE
PROSITE
Peptaibol
Pfam
PhosphoBase
PlantCARE/Server
Prolysis
Prot-Web /ProtoMap
PubMed
RB1 Gene Mutation Database
Radiation Hybrid Database
RsGDB
SBASE
SCOP /RegulonDB
Ribonuclease P Database
Ribosomal RNA Mutational Database /SENTRA
SMART
SRS
STACK
SV40 Large T-Antigen Mutant Database
SWISS-PROT & TREMBL
SYSTERS /SaccharomycesGenomeDatabase(SGD)
SeqAnalRef
Structural Alignments of Protein Sequences  /TBASE
TIGR Gene Indices
TIGR Microbial Database/ / >TRANSFAC - The Transcription Factor Database
TRRD /The Arabidopsis Information Resource (TAIR)
The Dali server
TransTerm / > TransTerm The Translational Signal Database
UM-BBD
UniGene
WIT
WIT The Tool for Cellular Reconstruction /Wnt Database
XREFdb
YIDB
ZFIN
ZmDB
dbEST
dbEST: database of "Expressed Sequence Tags" /dbSNP
iARC p53 Database
ooTFD
p53 Databases Human Type I and Type III Collagen Mutation Database
InBase
InterPro
Interact
Kabat Database
Kidney Development Database
KinMutBase
Klotho
LGIC
LIGAND
MAGEST
MEROPS
Kyoto Encyclopedia of Genes and Genomes (KEGG)
MHCPEP
MITOMAP
MITOP
MOTIF
MitBASE
Mendel Databases
MitoDat
Molecules R US
Mouse Atlas and Gene Expression Database
Mouse Genome Database (MGD)
Mouse Genome Informatics (MGI)
NRR
NRSub
O-GLYCBASE
Mouse Tumor Biology Database (MTB)
Mutation Spectra Database
PLACE
PMD
PPMdb
PKR
Munich Information Center for Protein Sequences (MIPS)
NCL Mutations
PIR
PIR-ALN
OMIM
OWL
Olfactory Receptor Database
PAHdb
PDB
PEDB
ProClass
ProDom
ProfileScan
PRINTS
PROMISE
PROSITE
Peptaibol
Pfam
PhosphoBase
PlantCARE
/Server
Prolysis
Prot-Web
ProtoMap
PubMed
RB1 Gene Mutation Database
Radiation Hybrid Database
RsGDB
SBASE
SCOP
RegulonDB
Ribonuclease P Database
Ribosomal RNA Mutational Database
SENTRA
SMART
SRS
STACK
SV40 Large T-Antigen Mutant Database
SWISS-PROT TREMBL
SYSTERS
SaccharomycesGenomeDatabase(SGD)
SeqAnalRef
Structural Alignments of Protein Sequences
TBASE
TIGR Gene Indices
TIGR Microbial Database
TRANSFAC - The Transcription Factor Database
TRRD
The Arabidopsis Information Resource (TAIR)
The Dali server
TransTerm
TransTerm The Translational Signal Database
UM-BBD
UniGene
WIT
WIT The Tool for Cellular Reconstruction
Wnt Database
XREFdb
YIDB
ZFIN
ZmDB
dbEST
dbEST:database of "Expressed Sequence Tags"
dbSNP
iARC p53 Database
ooTFD
p53 Databases

CCP11蛋白质与核酸序列整合数据库(Integrated Data Resources)

expasy蛋白质序列与结构分析(蛋白质分类和结构、2-D PAGE分析)与SWISS-PROT蛋白质序列数据库

蛋白质2维结构预测(Secondary structure prediction)

基因组数据库GDB(Genome Data Base,人类基因组作图与位点数据库,DNA序列的特征、模式与相关,基因识别分析)

基因表达:DNA芯片与散阵列技术

基因表达数据库达GXD(Gene Expression Database)

MicroArray Informatics at the EBI

AMADA 基因表达分析软件

MGI基因表达数据库

MIT分子模式识别 与相关链接

生物信息学与模式发现(IBM计算生物学中心,the Bioinformatics and Pattern Discovery group at IBM's Computational Biology Center.)

Molecular Biology Computational Resource)